0_0_39087620_20016.cpp:1:2: error: invalid preprocessing directive #!
1 | #!/bin/python3
| ^
0_0_39087620_20016.cpp:15:9: error: empty character constant
15 | '''
| ^~
0_0_39087620_20016.cpp:15:11: error: missing terminating ' character
15 | '''
| ^
0_0_39087620_20016.cpp:22:9: error: empty character constant
22 | '''
| ^~
0_0_39087620_20016.cpp:22:11: error: missing terminating ' character
22 | '''
| ^
0_0_39087620_20016.cpp:23:10: error: invalid preprocessing directive #Translate
23 | #Translate
| ^~~~~~~~~
0_0_39087620_20016.cpp:24:112: error: stray '#' in program
24 | nucl_dict = SeqIO.to_dict(SeqIO.parse(input_file,"fasta"), key_function = lambda rec: rec.description) #keep whitespace in FASTA header
| ^
0_0_39087620_20016.cpp:30:23: error: stray '#' in program
30 | stop_sign = 0 #count how many sequences contain stop codon
| ^
0_0_39087620_20016.cpp:45:10: error: invalid preprocessing directive #print
45 | #print(prot_dict)
| ^~~~~
0_0_39087620_20016.cpp:72:10: error: invalid preprocessing directive #Fasta
72 | #Fasta file info
| ^~~~~
0_0_39087620_20016.cpp:87:21: error: empty character constant
87 | inputfile = ''
| ^~
0_0_39087620_20016.cpp:88:23: error: empty character constant
88 | proteinfile = ''
| ^~
0_0_39087620_20016.cpp:89:15: error: empty character constant
89 | cnf = ''
| ^~
0_0_39087620_20016.cpp:90:15: error: empty character constant
90 | cpf = ''
| ^~
0_0_39087620_20016.cpp:91:23: error: empty character constant
91 | summaryfile = ''
| ^~
0_0_39087620_20016.cpp:130:10: error: invalid preprocessing directive #translate2
130 | #translate2(sys.argv[1],sys.argv[2],sys.argv[3],sys.argv[4],sys.argv[5],sys.argv[6])
| ^~~~~~~~~~
0_0_39087620_20016.cpp:132:10: error: invalid preprocessing directive #print
132 | #print(inputfile, proteinfile, summaryfile, readstart, rev_comp, no_stop)
| ^~~~~
0_0_39087620_20016.cpp:133:10: error: invalid preprocessing directive #translate2
133 | #translate2('test.fasta','out1.fasta','out2.txt',1,False,True)
| ^~~~~~~~~~
0_0_39087620_20016.cpp:3:1: error: 'from' does not name a type
3 | from Bio.Seq import translate, reverse_complement
| ^~~~
0_0_39087620_20016.cpp:26:9: error: 'corr_nucl_dict' does not name a type
26 | corr_nucl_dict = {}
| ^~~~~~~~~~~~~~
0_0_39087620_20016.cpp:27:9: error: 'corr_prot_dict' does not name a type
27 | corr_prot_dict = {}
| ^~~~~~~~~~~~~~
0_0_39087620_20016.cpp:29:9: error: 'read_start' does not name a type
29 | read_start = int(read_start)
| ^~~~~~~~~~
|
